Podcast Episodes
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126 Tree viz
We go over tree visualizations! * Microreact https://microreact.org/,https://www.phylocanvas.gl/ * grapetree https://github.com/achtman-lab/GrapeTre…
2 years, 1 month ago
125 Kostas Konstantinidis returns to talk to us about ANI and metagenomics
125 Kostas Konstantinidis returns to talk to us about ANI and metagenomics by Microbial Bioinformatics
2 years, 3 months ago
124 Kostas Konstantinidis talks to us about ANI and metagenomics
We talk with Kostas! For more information please visit https://enve-omics.gatech.edu/
2 years, 4 months ago
123 The Revolution of Hash Databases in cgMLST
In this episode of the Micro Binfie Podcast, hosts Dr. Andrew Page and Dr. Lee Katz delve into the fascinating world of hash databases and their appl…
2 years, 6 months ago
122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking
We discuss GAMBIT, software for accurately classifying bacteria and eukaryotes using a targeted k-mer based approach. GAMBIT software: https://githu…
2 years, 6 months ago
121 K-mers, Sourmash, and Open Source Software - More Conversations with Titus Brown
In this episode, Andrew Page and Lee Katz continue their conversation with Titus Brown, diving deeper into his work on k-mers, Sourmash, and open sou…
2 years, 8 months ago
120 Scaling Metagenomic Search with Sourmash - Conversations with Titus Brown
In this final episode with Titus Brown, the conversation focuses on his work scaling metagenomic search with Sourmash: An overview of what Sourmash d…
2 years, 8 months ago
119 The Challenges of Microbial Taxonomy - Conversations with Titus Brown
In this episode, Andrew Page and Lee Katz continue their chat with Titus Brown, focusing on taxonomy assignment in metagenomics: Topics discussed: De…
2 years, 8 months ago
118 Real bioinformaticians react to Jurassic Park
Andrew, Nabil, and Lee react to the bioinformatics and the science overall in the 1993 film Jurassic Park. We looked at these YouTube clips: * https:…
2 years, 9 months ago
117 From Math to Metagenomics - Titus Brown on Career Journeys and Software Solutions
In this episode of the Micro Binfie Podcast, Andrew Page and Lee Katz interview Titus Brown about his journey from studying math and physics as an un…
2 years, 9 months ago